If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ), 'gf_id' => 'HOM05D000823', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000823' ), 'data_identifier' => 'HOM05D000823', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000823', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '721', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A07p16940' => 'bna', 'A09p09600' => 'bna', 'Aa31LG1G15520' => 'aar', 'Actinidia00476' => 'ach', 'Actinidia12970' => 'ach', 'Actinidia15278' => 'ach', 'Actinidia22588' => 'ach', 'Actinidia27929' => 'ach', 'Actinidia38035' => 'ach', 'Ah.02g124430' => 'amhyb', 'Ah.02g128410' => 'amhyb', 'Ah.02g128420' => 'amhyb', 'Ah.03g141730' => 'amhyb', 'Ah.06g189660' => 'amhyb', 'Ah.06g189670' => 'amhyb', 'Ah.06g191720' => 'amhyb', 'Ah.06g191730' => 'amhyb', 'Ah.11g043200' => 'amhyb', 'AL7G18270' => 'aly', 'AL8G44400' => 'aly', 'Aqoxy1G00806' => 'aox', 'Aqoxy1G00851' => 'aox', 'Aqoxy1G00852' => 'aox', 'Aqoxy1G01711_Aqoxy1G01712' => 'aox', 'Aqoxy1G01757' => 'aox', 'Aqoxy214s002' => 'aox', 'Aqoxy3G02207' => 'aox', 'Aqoxy4G01727' => 'aox', 'Aqoxy6G00099' => 'aox', 'Aqoxy6G00282' => 'aox', 'Aqoxy6G00299' => 'aox', 'Aqoxy6G00928' => 'aox', 'Aqoxy6G00929' => 'aox', 'Aqoxy6G00930' => 'aox', 'Aqoxy6G00931' => 'aox', 'Aqoxy6G00932' => 'aox', 'Aqoxy6G00935' => 'aox', 'Aqoxy7G01140' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00BQAA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.108MS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VG87B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8D6Z2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3F6Y2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NFB9X0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NXSQ64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5RNGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY0BQQ' => 'arhy', 'AT4G33280' => 'ath', 'AT5G66980' => 'ath', 'ATR0626G172' => 'atr', 'ATR0665G295' => 'atr', 'ATR0796G188' => 'atr', 'ATR0796G296' => 'atr', 'ATR0923G004' => 'atr', 'ATR1120G190' => 'atr', 'ATR1132G056' => 'atr', 'Atru.chr13.592' => 'acertr', 'Atru.chr13.593' => 'acertr', 'Atru.chr13.594' => 'acertr', 'Atru.chr2.1428' => 'acertr', 'Atru.chr2.2842' => 'acertr', 'Atru.chr2.2899' => 'acertr', 'Atru.chr2.2906' => 'acertr', 'Atru.chr2.3033' => 'acertr', 'Atru.chr5.2832' => 'acertr', 'Atru.chr5.2872' => 'acertr', 'AUR62000527' => 'cqu', 'AUR62003245' => 'cqu', 'AUR62003317' => 'cqu', 'AUR62003318' => 'cqu', 'AUR62004797' => 'cqu', 'AUR62004798' => 'cqu', 'AUR62005183' => 'cqu', 'AUR62006873' => 'cqu', 'AUR62006874' => 'cqu', 'AUR62008538' => 'cqu', 'AUR62008541' => 'cqu', 'AUR62011404' => 'cqu', 'AUR62014922' => 'cqu', 'AUR62014923' => 'cqu', 'AUR62016265' => 'cqu', 'AUR62016267' => 'cqu', 'AUR62016657' => 'cqu', 'AUR62021552' => 'cqu', 'AUR62021553' => 'cqu', 'AUR62027222' => 'cqu', 'AUR62027225' => 'cqu', 'AUR62033880' => 'cqu', 'AUR62034342' => 'cqu', 'AUR62039039' => 'cqu', 'AUR62039040' => 'cqu', 'AUR62039041' => 'cqu', 'BcaB02g09965' => 'bca', 'BcaB04g20080' => 'bca', 'BcaB04g20081' => 'bca', 'BcaC04g23179' => 'bca', 'BcaC04g23181' => 'bca', 'BcaC06g34772' => 'bca', 'BolC7t43003H' => 'bol', 'BolC9t54023H' => 'bol', 'BraA07t29420Z' => 'bra', 'BraA09t36609Z' => 'bra', 'C07p24780' => 'bna', 'C09p11350' => 'bna', 'CAN.G134.42' => 'can', 'CAN.G322.80' => 'can', 'CAN.G371.85' => 'can', 'CAN.G371.87' => 'can', 'CAN.G371.89' => 'can', 'CAN.G371.91' => 'can', 'CAN.G777.5' => 'can', 'CAN.G836.26' => 'can', 'CAN.G836.27' => 'can', 'CAN.G919.45' => 'can', 'CANSAT01G0621' => 'cansat', 'CANSAT25G0071' => 'cansat', 'CANSAT25G0134' => 'cansat', 'CANSAT80G0874' => 'cansat', 'CARHR241360' => 'chi', 'CARHR280710' => 'chi', 'Carub.0007s0718' => 'cru', 'Carub.0008s2753' => 'cru', 'Ca_13317_v3' => 'car', 'Ca_13318_v3' => 'car', 'Ca_13319_v3' => 'car', 'Cc00_g07580' => 'ccan', 'Cc02_g18270' => 'ccan', 'Cc07_g05480' => 'ccan', 'Cc07_g05490' => 'ccan', 'Cc07_g20980' => 'ccan', 'Cc10_g03670' => 'ccan', 'Cc10_g03680' => 'ccan', 'CDE01G0565' => 'cde', 'CDE04G1885' => 'cde', 'Cfa004222' => 'cfa', 'Cfa004223' => 'cfa', 'Cfa018483' => 'cfa', 'Ciclev10000881m.g' => 'ccl', 'Ciclev10001063m.g' => 'ccl', 'Ciclev10026137m.g' => 'ccl', 'Ciclev10028843m.g' => 'ccl', 'Ciclev10029372m.g' => 'ccl', 'CiPaw.01G027400' => 'cil', 'CiPaw.02G012800' => 'cil', 'CiPaw.15G066400' => 'cil', 'CiPaw.16G051600' => 'cil', 'ClCG05G019470' => 'cla', 'ClCG08G015500' => 'cla', 'COL.COLO4_21352' => 'col', 'COL.COLO4_22193' => 'col', 'COL.COLO4_26417' => 'col', 'COL.COLO4_26418' => 'col', 'COL.COLO4_26419' => 'col', 'COL.COLO4_26420' => 'col', 'COL.COLO4_26423' => 'col', 'COL.COLO4_26424' => 'col', 'COL.COLO4_26425' => 'col', 'COL.COLO4_26426' => 'col', 'COL.COLO4_26871' => 'col', 'Cpa.g.c39547' => 'cpa', 'Cpa.g.sc128.16' => 'cpa', 'Cpa.g.sc15.87' => 'cpa', 'Cpa.g.sc357.1' => 'cpa', 'Cpa.g.sc64.15' => 'cpa', 'Cpa.g.sc64.16' => 'cpa', 'Cpa.g.sc7.145' => 'cpa', 'CsaV3_2G028280' => 'csa', 'CsaV3_3G044580' => 'csa', 'CsaV3_6G042810' => 'csa', 'CSS0000969' => 'camsi', 'CSS0019656' => 'camsi', 'CSS0025372' => 'camsi', 'CSS0026232' => 'camsi', 'CSS0037658' => 'camsi', 'CSS0046906' => 'camsi', 'DCAR_003839' => 'dca', 'DCAR_012760' => 'dca', 'DCAR_022876' => 'dca', 'DCAR_029010' => 'dca', 'DCAR_029047' => 'dca', 'DCAR_029419' => 'dca', 'Dinv23604' => 'din', 'Dinv26369' => 'din', 'Dinv26758' => 'din', 'Dinv26759' => 'din', 'Dinv26764' => 'din', 'Dinv39357' => 'din', 'Dinv42111' => 'din', 'Duzib041G0766' => 'dzi', 'Duzib093G1908' => 'dzi', 'Duzib093G1947' => 'dzi', 'Duzib187G0271' => 'dzi', 'Duzib248G0282' => 'dzi', 'Duzib264G0448' => 'dzi', 'ECA232G4654' => 'eca', 'ECA247G3085' => 'eca', 'EL10Ac1g01749' => 'bvu', 'EL10Ac1g02025' => 'bvu', 'EL10Ac4g08916' => 'bvu', 'EL10Ac4g08957' => 'bvu', 'EL10Ac4g08958' => 'bvu', 'EL10Ac4g09374' => 'bvu', 'EL10Ac4g09636' => 'bvu', 'EL10Ac5g11929' => 'bvu', 'EL10Ac6g14702' => 'bvu', 'EL10Ac6g14741' => 'bvu', 'EL10Ac6g14829' => 'bvu', 'EL10Ac7g17567' => 'bvu', 'EL10Ac8g19102' => 'bvu', 'EL10Ac9g21795' => 'bvu', 'EL10Ac9g21796' => 'bvu', 'Eucgr.F00044' => 'egr', 'Eucgr.F02399' => 'egr', 'FAN01G3102' => 'fan', 'FAN03G0739' => 'fan', 'FAN03G1989' => 'fan', 'FAN04G2451' => 'fan', 'FAN05G3933' => 'fan', 'FAN05G5448' => 'fan', 'FAN06G0999' => 'fan', 'FAN06G1437' => 'fan', 'FAN06G1958' => 'fan', 'FAN07G2326' => 'fan', 'FAN08G1659' => 'fan', 'FAN08G3323' => 'fan', 'FAN09G4648' => 'fan', 'FAN10G3479' => 'fan', 'FAN11G2176' => 'fan', 'FAN12G2331' => 'fan', 'FAN13G1961' => 'fan', 'FAN15G0214' => 'fan', 'FAN15G0739' => 'fan', 'FAN15G0813' => 'fan', 'FAN15G0917' => 'fan', 'FAN15G2113' => 'fan', 'FAN15G2779' => 'fan', 'FAN15G3412' => 'fan', 'FAN15G3419' => 'fan', 'FAN15G3650' => 'fan', 'FAN16G0683' => 'fan', 'FAN18G2538' => 'fan', 'FAN19G0591' => 'fan', 'FAN19G1451' => 'fan', 'FAN20G0318' => 'fan', 'FAN20G0438' => 'fan', 'FAN20G0950' => 'fan', 'FAN20G2013' => 'fan', 'FAN20G2555' => 'fan', 'FAN20G2588' => 'fan', 'FAN20G3193' => 'fan', 'FAN23G1978' => 'fan', 'FAN23G2649' => 'fan', 'FAN24G0466' => 'fan', 'FAN24G0699' => 'fan', 'FAN24G1365' => 'fan', 'FAN24G1928' => 'fan', 'FAN24G2044' => 'fan', 'FAN24G3249' => 'fan', 'FAN27G1265' => 'fan', 'FAN27G1325' => 'fan', 'FAN27G1362' => 'fan', 'FAN27G1379' => 'fan', 'FAN27G2261' => 'fan', 'FAN27G3396' => 'fan', 'FvH4_1g22700' => 'fve', 'FvH4_1g23530' => 'fve', 'FvH4_2g06920' => 'fve', 'FvH4_2g06960' => 'fve', 'FvH4_2g06970' => 'fve', 'FvH4_2g07230' => 'fve', 'FvH4_2g07231' => 'fve', 'FvH4_2g07240' => 'fve', 'FvH4_2g07290' => 'fve', 'FvH4_2g07300' => 'fve', 'FvH4_2g27400' => 'fve', 'FvH4_2g40640' => 'fve', 'FvH4_2g40960' => 'fve', 'FvH4_3g19710' => 'fve', 'FvH4_4g19990' => 'fve', 'FvH4_4g20070' => 'fve', 'FvH4_4g23020' => 'fve', 'FvH4_5g19930' => 'fve', 'FvH4_5g30470' => 'fve', 'FvH4_6g23740' => 'fve', 'FvH4_7g01780' => 'fve', 'FvH4_7g23440' => 'fve', 'Glyma.03G246400' => 'gma', 'Glyma.11G124200' => 'gma', 'Glyma.11G124300' => 'gma', 'Glyma.12G048700' => 'gma', 'Glyma.14G079100' => 'gma', 'Glyma.14G079200' => 'gma', 'Glyma.17G245900' => 'gma', 'Glyma.17G246000' => 'gma', 'Gohir.A01G117900' => 'ghi', 'Gohir.A02G160700' => 'ghi', 'Gohir.A02G160733' => 'ghi', 'Gohir.A02G160800' => 'ghi', 'Gohir.A03G116300' => 'ghi', 'Gohir.A05G199000' => 'ghi', 'Gohir.A11G188600' => 'ghi', 'Gohir.D01G106300' => 'ghi', 'Gohir.D02G093100' => 'ghi', 'Gohir.D03G019700' => 'ghi', 'Gohir.D03G019725' => 'ghi', 'Gohir.D03G019750' => 'ghi', 'Gohir.D05G201700' => 'ghi', 'Gohir.D09G086300' => 'ghi', 'Gohir.D11G195101' => 'ghi', 'Gorai.002G130300' => 'gra', 'Gorai.003G020400' => 'gra', 'Gorai.003G020600' => 'gra', 'Gorai.003G020700' => 'gra', 'Gorai.005G105400' => 'gra', 'Gorai.006G102500' => 'gra', 'Gorai.007G208600' => 'gra', 'Gorai.009G207400' => 'gra', 'GSVIVG01009586001' => 'vvi', 'GSVIVG01031848001' => 'vvi', 'GSVIVG01031850001' => 'vvi', 'HanXRQChr04g0104181' => 'han', 'HanXRQChr12g0361051' => 'han', 'Haze_08007' => 'cav', 'Haze_08008' => 'cav', 'Haze_08009' => 'cav', 'Haze_08013' => 'cav', 'Haze_16038' => 'cav', 'Haze_17590' => 'cav', 'Hma1.2p1_0023F.1_g015270' => 'hma', 'Hma1.2p1_0260F.1_g104520' => 'hma', 'Hma1.2p1_1527F.1_g289040' => 'hma', 'HPP92_003368' => 'vpl', 'HPP92_014045' => 'vpl', 'HPP92_017058' => 'vpl', 'Hund06201' => 'sun', 'Hund06204' => 'sun', 'Hund06613' => 'sun', 'Hund06885' => 'sun', 'Hund06886' => 'sun', 'Hund06887' => 'sun', 'Hund06888' => 'sun', 'Hund08735' => 'sun', 'Hund17625' => 'sun', 'Hund19663' => 'sun', 'Hund19725' => 'sun', 'Hund21798' => 'sun', 'Hund26609' => 'sun', 'Lalb_Chr14g0368921' => 'lal', 'Lalb_Chr22g0355281' => 'lal', 'Lalb_Chr22g0355291' => 'lal', 'Lalb_Chr24g0399131' => 'lal', 'Lj4A48T71' => 'lonja', 'Lj5A204G92' => 'lonja', 'Lj5A205T72' => 'lonja', 'Lj5g0024307' => 'lja', 'Lj5g0027331' => 'lja', 'Lj6C562T8' => 'lonja', 'Lsat_1_v5_gn_1_19200' => 'lsa', 'Lsat_1_v5_gn_3_94221' => 'lsa', 'Lsat_1_v5_gn_4_129921' => 'lsa', 'Lsat_1_v5_gn_4_177680' => 'lsa', 'Manes.05G168900' => 'mes', 'Manes.13G130800' => 'mes', 'Manes.13G131000' => 'mes', 'Manes.18G025570' => 'mes', 'Manes.18G025940' => 'mes', 'MBI16_g19884_MAGBIO' => 'mbi', 'MBI16_g19885_MAGBIO' => 'mbi', 'MBI16_g26333_MAGBIO' => 'mbi', 'MBI16_g31478_MAGBIO' => 'mbi', 'MD03G1230100' => 'mdo', 'MD03G1230200' => 'mdo', 'MD04G1034500' => 'mdo', 'MD04G1034600' => 'mdo', 'MD05G1072700' => 'mdo', 'MD08G1039500' => 'mdo', 'MD08G1039600' => 'mdo', 'MD11G1250800' => 'mdo', 'MD11G1251100' => 'mdo', 'MD11G1251200' => 'mdo', 'MD15G1034200' => 'mdo', 'Medtr1g021270' => 'mtr', 'Medtr1g021290' => 'mtr', 'Medtr1g021295' => 'mtr', 'Medtr1g021320' => 'mtr', 'Medtr1g021330' => 'mtr', 'Medtr1g021350' => 'mtr', 'Medtr1g021360' => 'mtr', 'Medtr1g021380' => 'mtr', 'Medtr1g021400' => 'mtr', 'Medtr1g021410' => 'mtr', 'Medtr1g021435' => 'mtr', 'Medtr1g021440' => 'mtr', 'Medtr1g021500' => 'mtr', 'Medtr4g068300' => 'mtr', 'Medtr6g036740' => 'mtr', 'MELO3C007521.2' => 'cme', 'MELO3C010905.2' => 'cme', 'MELO3C018249.2' => 'cme', 'Migut.B00294' => 'egut', 'Migut.B01167' => 'egut', 'Migut.B01168' => 'egut', 'Migut.B01169' => 'egut', 'Migut.C00649' => 'egut', 'Migut.M00219' => 'egut', 'MSTRG.1316' => 'ama', 'MSTRG.16968' => 'ama', 'MSTRG.20125' => 'ama', 'Nitab4.5_0000068g0140' => 'nta', 'Nitab4.5_0000108g0220' => 'nta', 'Nitab4.5_0000380g0010' => 'nta', 'Nitab4.5_0001014g0140' => 'nta', 'Nitab4.5_0001401g0170' => 'nta', 'Nitab4.5_0001982g0130' => 'nta', 'Nitab4.5_0002280g0040' => 'nta', 'Nitab4.5_0008194g0030' => 'nta', 'Nitab4.5_0008897g0030' => 'nta', 'Nn1g06982' => 'nnu', 'Nn5g28071' => 'nnu', 'Nn5g29398' => 'nnu', 'Nn5g29400' => 'nnu', 'Nn5g29401' => 'nnu', 'Nn5g29404' => 'nnu', 'Nn5g29405' => 'nnu', 'Nn6g31650' => 'nnu', 'Nn6g32053' => 'nnu', 'Nn6g32134' => 'nnu', 'Nn6g32135' => 'nnu', 'Nn6g32136' => 'nnu', 'Nn6g32138' => 'nnu', 'Nn6g32139' => 'nnu', 'Nn6g32142' => 'nnu', 'Nn7g36387' => 'nnu', 'Nn7g36388' => 'nnu', 'Nn7g38143' => 'nnu', 'Nn8g39858' => 'nnu', 'Nn8g40849' => 'nnu', 'Oeu006163.1' => 'oeu', 'Oeu013043.1' => 'oeu', 'Oeu026134.1' => 'oeu', 'Oeu028452.1' => 'oeu', 'Oeu028453.1' => 'oeu', 'Os01g0723500' => 'osa', 'Os01g0723700' => 'osa', 'Os03g0621600' => 'osa', 'Os03g0621650' => 'osa', 'Os03g0621900' => 'osa', 'Os03g0622100' => 'osa', 'Os03g0622200' => 'osa', 'Os06g0632500' => 'osa', 'Os08g0324300' => 'osa', 'Os08g0325134' => 'osa', 'Os11g0197600' => 'osa', 'Os12g0592300' => 'osa', 'Peaxi162Scf00016g01342' => 'pax', 'Peaxi162Scf00016g01343' => 'pax', 'Peaxi162Scf00098g00710' => 'pax', 'Peaxi162Scf00288g01211' => 'pax', 'Peaxi162Scf00392g00315' => 'pax', 'Peaxi162Scf00392g00316' => 'pax', 'Peaxi162Scf01514g00024' => 'pax', 'PGR031G0338' => 'pgr', 'PGR042G1627' => 'pgr', 'PGR042G3245' => 'pgr', 'PGR044G2084' => 'pgr', 'PGR083G0539' => 'pgr', 'PGR083G0587' => 'pgr', 'PGR083G1938' => 'pgr', 'PGR083G2057' => 'pgr', 'PGR083G2634' => 'pgr', 'PGR083G2640' => 'pgr', 'PGR102G0754' => 'pgr', 'PGR102G1389' => 'pgr', 'PGR102G2553' => 'pgr', 'PGR102G3079' => 'pgr', 'PGSC0003DMG400005893' => 'stu', 'PGSC0003DMG400005934' => 'stu', 'PGSC0003DMG400010079' => 'stu', 'PGSC0003DMG400040208' => 'stu', 'Phvul.001G018400' => 'pvu', 'Phvul.001G018500' => 'pvu', 'Phvul.006G100700' => 'pvu', 'Phvul.011G050700' => 'pvu', 'Phvul.011G050800' => 'pvu', 'Potri.002G129800' => 'ptr', 'Potri.002G129900' => 'ptr', 'Potri.007G035500' => 'ptr', 'Potri.014G036800' => 'ptr', 'Potri.014G036900' => 'ptr', 'Pp3c17_16170' => 'ppa', 'Pp3c22_20610' => 'ppa', 'Pp3c9_21470' => 'ppa', 'Prupe.1G388000' => 'ppe', 'Prupe.1G388100' => 'ppe', 'Prupe.1G388200' => 'ppe', 'Prupe.4G178000' => 'ppe', 'Prupe.4G178100' => 'ppe', 'Prupe.4G178200' => 'ppe', 'Prupe.4G178300' => 'ppe', 'Prupe.4G178400' => 'ppe', 'Prupe.4G178500' => 'ppe', 'Prupe.4G206300' => 'ppe', 'Prupe.4G206800' => 'ppe', 'Prupe.4G206900' => 'ppe', 'Prupe.4G207000' => 'ppe', 'Prupe.7G064600' => 'ppe', 'Prupe.8G113100' => 'ppe', 'Psat2g024080' => 'psa', 'Psat6g011480' => 'psa', 'Psat6g011520' => 'psa', 'Psat6g011600' => 'psa', 'Psat6g011640' => 'psa', 'Psat7g070000' => 'psa', 'Psat7g207920' => 'psa', 'PSO017G0811' => 'pso', 'PSO017G3089' => 'pso', 'PSO017G3561' => 'pso', 'PSO017G5313' => 'pso', 'PSO017G5799' => 'pso', 'PSO063G3506' => 'pso', 'PSO063G5705' => 'pso', 'PSO170G0378' => 'pso', 'PSO170G0660' => 'pso', 'PSO170G1617' => 'pso', 'PSO170G2291' => 'pso', 'PSO170G3350' => 'pso', 'PSO170G5993' => 'pso', 'PSO339G4233' => 'pso', 'PSO357G0640' => 'pso', 'PSO384G0362' => 'pso', 'PSO421G0015' => 'pso', 'PSO421G0150' => 'pso', 'PSO421G0216' => 'pso', 'PSO421G0232' => 'pso', 'PSO421G0278' => 'pso', 'PSO421G0312' => 'pso', 'PSO421G0689' => 'pso', 'PSO455G0036' => 'pso', 'PSO478G4442' => 'pso', 'PSO478G5068' => 'pso', 'PSO541G4542' => 'pso', 'PSO541G5436' => 'pso', 'PSO541G6101' => 'pso', 'PSO675G0142' => 'pso', 'PSO675G1582' => 'pso', 'PSO675G4238' => 'pso', 'PSO675G7843' => 'pso', 'QL02p006444' => 'qlo', 'QL02p006454' => 'qlo', 'QL02p006459' => 'qlo', 'QL02p006488' => 'qlo', 'QL02p006491' => 'qlo', 'QL06p043991' => 'qlo', 'QL10p059777' => 'qlo', 'QL11p039132' => 'qlo', 'QL11p039199' => 'qlo', 'RcHm_v2.0_Chr1g0318651' => 'rch', 'RcHm_v2.0_Chr1g0318881' => 'rch', 'RcHm_v2.0_Chr1g0319011' => 'rch', 'RcHm_v2.0_Chr1g0356381' => 'rch', 'RcHm_v2.0_Chr3g0482191' => 'rch', 'RcHm_v2.0_Chr4g0425711' => 'rch', 'RcHm_v2.0_Chr5g0033031' => 'rch', 'RcHm_v2.0_Chr5g0033041' => 'rch', 'RcHm_v2.0_Chr6g0259241' => 'rch', 'RcHm_v2.0_Chr6g0259251' => 'rch', 'RcHm_v2.0_Chr6g0259321' => 'rch', 'RcHm_v2.0_Chr6g0259331' => 'rch', 'RcHm_v2.0_Chr6g0259781' => 'rch', 'RcHm_v2.0_Chr6g0259791' => 'rch', 'RcHm_v2.0_Chr6g0259811' => 'rch', 'RcHm_v2.0_Chr6g0259881' => 'rch', 'RcHm_v2.0_Chr6g0259931' => 'rch', 'RcHm_v2.0_Chr6g0296251' => 'rch', 'RcHm_v2.0_Chr6g0299611' => 'rch', 'RcHm_v2.0_Chr6g0300031' => 'rch', 'RcHm_v2.0_Chr7g0208501' => 'rch', 'RcHm_v2.0_Chr7g0224941' => 'rch', 'Rhsim06G0040900' => 'rsi', 'Rhsim07G0234100' => 'rsi', 'Rhsim08G0114600' => 'rsi', 'Rhsim10G0125600' => 'rsi', 'Rhsim11G0033700' => 'rsi', 'Rhsim11G0170400' => 'rsi', 'Sabra02G0101800' => 'sbr', 'Sabra02G0101900' => 'sbr', 'Sabra07G0031200' => 'sbr', 'Sabra14G0026500' => 'sbr', 'SalBow1G0665' => 'sbo', 'SalBow1G2901' => 'sbo', 'SalBow2G3252' => 'sbo', 'SalBow4G1849' => 'sbo', 'SalBow5G2248' => 'sbo', 'SalBow7G0768' => 'sbo', 'SalBow7G4543' => 'sbo', 'SalBow8G2693' => 'sbo', 'SalBow8G3123' => 'sbo', 'SalBow8G3609' => 'sbo', 'SalBow8G3887' => 'sbo', 'Sc15g0006570' => 'sci', 'Sc15g0006580' => 'sci', 'Sed0020190' => 'sed', 'Sed0022882' => 'sed', 'Sed0023289' => 'sed', 'Sed0025737' => 'sed', 'SEGI_00710' => 'sgi', 'SEGI_01735' => 'sgi', 'SEGI_01982' => 'sgi', 'SEGI_02416' => 'sgi', 'SEGI_02633' => 'sgi', 'SEGI_02705' => 'sgi', 'SEGI_02922' => 'sgi', 'SEGI_06639' => 'sgi', 'SEGI_12498' => 'sgi', 'SEGI_17863' => 'sgi', 'SEGI_17947' => 'sgi', 'SEGI_18580' => 'sgi', 'SEGI_19492' => 'sgi', 'SEGI_20414' => 'sgi', 'SEGI_23984' => 'sgi', 'SEGI_28063' => 'sgi', 'SEGI_29000' => 'sgi', 'SEGI_31775' => 'sgi', 'SEGI_32289' => 'sgi', 'SEGI_33129' => 'sgi', 'SEGI_33179' => 'sgi', 'SEGI_33509' => 'sgi', 'SEGI_33530' => 'sgi', 'SEGI_34521' => 'sgi', 'SEGI_35222' => 'sgi', 'SEGI_37905' => 'sgi', 'SEGI_41472' => 'sgi', 'SGA_v2.0_scaffold204G41626' => 'sas', 'SGA_v2.0_scaffold24G10573' => 'sas', 'SGA_v2.0_scaffold32G13131' => 'sas', 'SGA_v2.0_scaffold55G19766' => 'sas', 'SGA_v2.0_scaffold82G26218' => 'sas', 'Solyc01g079560.3' => 'sly', 'Solyc01g096790.4' => 'sly', 'Solyc01g108930.3' => 'sly', 'Solyc02g032080.2' => 'sly', 'Solyc02g090170.3' => 'sly', 'Solyc04g079590.3' => 'sly', 'Solyc06g073980.4' => 'sly', 'Solyc06g074160.3' => 'sly', 'Sopen01g031340' => 'spe', 'Sopen01g040490' => 'spe', 'Sopen01g051130' => 'spe', 'Sopen02g034860' => 'spe', 'Sopen04g033170' => 'spe', 'Sopen06g030390' => 'spe', 'Sopen06g030580' => 'spe', 'Sp2g29690' => 'spa', 'Sp7g31020' => 'spa', 'TAR376G0237' => 'tar', 'TAR376G0714' => 'tar', 'TAR381G0348' => 'tar', 'TAR625G0462' => 'tar', 'TAR625G1233' => 'tar', 'TAR628G1487' => 'tar', 'THA.LOC104803403' => 'tha', 'THA.LOC104803688' => 'tha', 'THA.LOC104803689' => 'tha', 'THA.LOC104822792' => 'tha', 'Thecc.01G046600' => 'tca', 'Thecc.01G047300' => 'tca', 'Thecc.02G093100' => 'tca', 'Thecc.08G016800' => 'tca', 'Thecc.08G016900' => 'tca', 'Thhalv10004496m.g' => 'esa', 'Thhalv10027291m.g' => 'esa', 'TPR.G10231' => 'tpr', 'TPR.G13675' => 'tpr', 'TPR.G13677' => 'tpr', 'TPR.G13699' => 'tpr', 'TPR.G15734' => 'tpr', 'TPR.G15748' => 'tpr', 'TPR.G15757' => 'tpr', 'TPR.G15760' => 'tpr', 'TPR.G15761' => 'tpr', 'TPR.G15766' => 'tpr', 'TPR.G18789' => 'tpr', 'TPR.G32518' => 'tpr', 'TPR.G34489' => 'tpr', 'TPR.G726' => 'tpr', 'TWI12G0966' => 'twi', 'TWI12G1175' => 'twi', 'TWI31G0648' => 'twi', 'TWI31G0651' => 'twi', 'TWI36G1662' => 'twi', 'TWI38G0162' => 'twi', 'TWI38G2045' => 'twi', 'TWI39G0837' => 'twi', 'TWI56G0706' => 'twi', 'TWI56G0742' => 'twi', 'TWI56G0922' => 'twi', 'TWI75G0037' => 'twi', 'TWI79G1075' => 'twi', 'unitig_46.g18625' => 'ugi', 'unitig_61.g26370' => 'ugi', 'vmacro02160' => 'vma', 'vmacro04480' => 'vma', 'vmacro04665' => 'vma', 'vmacro05287' => 'vma', 'vmacro17894' => 'vma', 'vmacro17895' => 'vma', 'vmacro17896' => 'vma', 'vmacro21581' => 'vma', 'vmacro21582' => 'vma', 'VMungo0235G0001' => 'vmu', 'VMungo0464G0216' => 'vmu', 'VMungo0540G0559' => 'vmu', 'VMungo0647G0862' => 'vmu', 'VMungo1127G1459' => 'vmu', 'Zm00001eb030510' => 'zma', 'Zm00001eb033180' => 'zma', 'Zm00001eb051340' => 'zma', 'Zm00001eb051350' => 'zma', 'Zm00001eb168870' => 'zma', 'Zm00001eb218990' => 'zma', 'Zm00001eb361750' => 'zma' ) $gf_id = 'HOM05D000823' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000823' ) $data_identifier = 'HOM05D000823' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 2, 'aox' => (int) 18, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 7, 'acertr' => (int) 10, 'cqu' => (int) 26, 'bca' => (int) 6, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 10, 'cansat' => (int) 4, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 2, 'col' => (int) 11, 'cpa' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 2, 'bvu' => (int) 15, 'egr' => (int) 2, 'fan' => (int) 51, 'fve' => (int) 22, 'gma' => (int) 8, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 2, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 13, 'lal' => (int) 4, 'lonja' => (int) 4, 'lja' => (int) 2, 'lsa' => (int) 4, 'mes' => (int) 5, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 9, 'nnu' => (int) 20, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 7, 'pgr' => (int) 14, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 3, 'ppe' => (int) 15, 'psa' => (int) 7, 'pso' => (int) 33, 'qlo' => (int) 9, 'rch' => (int) 22, 'rsi' => (int) 6, 'sbr' => (int) 4, 'sbo' => (int) 11, 'sci' => (int) 2, 'sed' => (int) 4, 'sgi' => (int) 27, 'sas' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 6, 'tha' => (int) 4, 'tca' => (int) 5, 'esa' => (int) 2, 'tpr' => (int) 14, 'twi' => (int) 13, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1